Two unique and valuable features of this program over some other visualization program are the use of the powerful programming language ( Python) and an emphasis on high-quality graphics. It can also perform many other valuable tasks (such as editing PDB files) to assist you in your research. Warren DeLano, PyMOL is a molecular graphics system with an embedded Python interpreter designed for real-time visualization and rapid generation of high-quality molecular graphics images and animations. For example, it is not designed for building molecules or performing many types of calculations that commercial programs such as SYBYL do.Īccording to the program's author, Dr. PyMOL is not as capable as SYBYL in some areas. A secondary reason is that PyMOL offers a uniquely powerful way to create remarkably stunning images and animations that help to understand molecules under study. The main reasons of using a program such as PyMOL are affordability and accessibility: as a student you can download an educational version for free, and use it with any computer you have, be it Windows, Mac, or Linux. You will continue mastering this skill today with the help of another molecular visualization program, PyMOL.
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But more importantly, you started learning how to think about the properties and functions of biological macromolecules via computer visualization.
Welcome back to the molecular visualization tutorial! In the previous session, you became familiar with the Unix operating system, and learned some basic features of the program SYBYL. PyMOL Tutorial: Introduction Chem 110L: Macromolecular Visualization Laboratory Exercise: PyMOL
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